4BBM Transferase date Sep 26, 2012
title Crystal Structure Of The Human Cdkl2 Kinase Domain With Boun
authors P.Canning, J.M.Elkins, C.D.O.Cooper, P.Mahajan, N.Daga, G.Berridg N.Burgess-Brown, J.R.C.Muniz, T.Krojer, C.H.Arrowsmith, A.M.Edw C.Bountra, F.Von Delft, A.Bullock
compound source
Molecule: Cyclin-Dependent Kinase-Like 2
Chain: A, B
Fragment: Kinase Domain, Residues 1-308
Synonym: Protein Kinase P56 Kkiamre, Serinethreonine-Prote Kkiamre;
Ec: 2.7.11.22
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Lic-Bse
Other_details: Site-Directed Mutagenesis
symmetry Space Group: P 1
R_factor 0.243 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.583 68.047 82.343 71.53 89.92 88.97
method X-Ray Diffractionresolution 2.00 Å
ligand CL, EDO, TC0 enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (4bbm.pdb1.gz) 102 Kb
  • Biological Unit Coordinates (4bbm.pdb2.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 4BBM
  • CSU: Contacts of Structural Units for 4BBM
  • Structure Factors (1572 Kb)
  • Retrieve 4BBM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BBM from S2C, [Save to disk]
  • Re-refined 4bbm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BBM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BBM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BBM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bbm_A] [4bbm_B] [4bbm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BBM: [S_TKc ] by SMART
  • Other resources with information on 4BBM
  • Community annotation for 4BBM at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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