4BD3 Transcription date Oct 04, 2012
title Phf19 Links Methylated Lysine 36 Of Histone H3 To Regulation Polycomb Activity
authors A.Lapinaite, B.Simon, T.Carlomagno
compound source
Molecule: Phd Finger Protein 19
Chain: A
Fragment: Tudor Domain, Residues 38-95
Synonym: Polycomb-Like Protein 3, Hpcl3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_variant: Rosetta 2
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet-Mcn

Molecule: Histone H3
Chain: B
Fragment: H3(31-41)K36me3, Residues 32-42
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand M3L enzyme
Primary referencePhf19 links methylated Lys36 of histone H3 to regulation of Polycomb activity., Ballare C, Lange M, Lapinaite A, Martin GM, Morey L, Pascual G, Liefke R, Simon B, Shi Y, Gozani O, Carlomagno T, Benitah SA, Di Croce L, Nat Struct Mol Biol. 2012 Oct 28. doi: 10.1038/nsmb.2434. PMID:23104054
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (4bd3.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 4BD3
  • CSU: Contacts of Structural Units for 4BD3
  • Original NMR restraints for 4BD3 from PDB
  • Retrieve 4BD3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BD3 from S2C, [Save to disk]
  • View 4BD3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BD3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BD3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bd3] [4bd3_B] [4bd3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BD3: [TUDOR ] by SMART
  • Other resources with information on 4BD3
  • Community annotation for 4BD3 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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