4BGJ Protein Transport date Mar 27, 2013
title Crystal Structure Of The Phox-Homology Domain Of Human Sorti 14
authors M.Vollmar, W.Kiyani, L.Shrestha, S.Goubin, T.Krojer, A.C.W.Pike, E.Carpenter, A.Quigley, A.Mckenzie, N.Burgess-Brown, F.Von Delf C.H.Arrowsmith, C.Bountra, A.Edwards, W.W.Yue
compound source
Molecule: Sorting Nexin-14
Chain: A
Fragment: Phox-Homology Domain, Residues 505-649
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rare
Expression_system_vector_type: Plasmid
Expression_system_vector: Pnic28-Bsa4
symmetry Space Group: I 41
R_factor 0.205 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.611 88.611 73.082 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.55 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (4bgj.pdb1.gz) 41 Kb
  • CSU: Contacts of Structural Units for 4BGJ
  • Structure Factors (122 Kb)
  • Retrieve 4BGJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BGJ from S2C, [Save to disk]
  • Re-refined 4bgj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BGJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BGJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BGJ, from MSDmotif at EBI
  • Fold representative 4bgj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bgj_A] [4bgj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BGJ: [PX ] by SMART
  • Other resources with information on 4BGJ
  • Community annotation for 4BGJ at PDBWiki (http://pdbwiki.org)

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