4BGM	Oxidoreductase	date	Mar 27, 2013
title	Three Dimensional Structure Of Human Gamma-Butyrobetaine Hyd In Complex With 3-Carboxy-N-(2-Fluoroethyl)-N,N-Dimethylpro Aminium Chloride
authors	K.Tars, J.Leitans, A.Kazaks
compound		source
Molecule: Gamma-Butyrobetaine Dioxygenase Chain: A Synonym: Gamma-Butyrobetaine Hydroxylase, Gamma-Bbh, Gamma- Butyrobetaine, 2-Oxoglutarate Dioxygenase; Ec: 1.14.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Saccharomyces Cerevisiae Expression_system_common: Baker'S Yeast Expression_system_taxid: 4932 Expression_system_strain: Ah22
symmetry	Space Group: H 3 2	R_factor 0.156 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 107.182 107.182 205.171 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	16D, DLT, OGA, ZN	enzyme	Oxidoreductase E.C.1.14.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Targeting carnitine biosynthesis: discovery of new inhibitors against gamma-butyrobetaine hydroxylase., Tars K, Leitans J, Kazaks A, Zelencova D, Liepinsh E, Kuka J, Makrecka M, Lola D, Andrianovs V, Gustina D, Grinberga S, Liepinsh E, Kalvinsh I, Dambrova M, Loza E, Pugovics O, J Med Chem. 2014 Feb 26. PMID:24571165

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk] Biological Unit Coordinates (4bgm.pdb1.gz) 135 Kb LPC: Ligand-Protein Contacts for 4BGM CSU: Contacts of Structural Units for 4BGM Structure Factors (279 Kb) Retrieve 4BGM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4BGM from S2C, [Save to disk] Re-refined 4bgm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4BGM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4BGM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4BGM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4bgm_A] [4bgm] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4BGM

Community annotation for 4BGM at PDBWiki (http://pdbwiki.org)

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