4BH1	Viral Protein	date	Mar 29, 2013
title	H5 (Tyty) Influenza Virus Haemagglutinin In Complex With Avi Receptor Analogue 3'-Sln
authors	X.Xiong, P.J.Coombs, S.R.Martin, J.Liu, H.Xiao, J.W.Mccauley, K.Lo P.A.Walker, P.J.Collins, Y.Kawaoka, J.J.Skehel, S.J.Gamblin
compound		source
Molecule: Hemagglutinin Chain: A, C, E Fragment: Ha1 Of Trypsin Released Ectodomain, Residues 17-3 Synonym: Haemagglutinin Ha1 Engineered: Yes		Organism_scientific: Influenza A Virus Organism_taxid: 375457 Strain: Aturkeyturkey12005(H5n1) Variant: Avn119404nibrg14 Vaccine Strain Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pacgp67a
Molecule: Hemagglutinin Chain: B, D, F Fragment: Ha2 Of Trypsin Released Ectodomain, Residues 347- Synonym: Haemagglutinin Ha2 Engineered: Yes		Organism_scientific: Influenza A Virus Organism_taxid: 375457 Strain: Aturkeyturkey12005(H5n1) Variant: Avn119404nibrg14 Vaccine Strain Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pacgp67a
symmetry	Space Group: P 1 21 1	R_factor 0.205 R_Free 0.224
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.859 228.288 71.920 90.00 113.71 90.00
method	X-Ray Diffraction	resolution	2.15 Å
ligand	GAL, NAG, PO4, SIA	enzyme
Gene Ontology	Chain Function Process Component A, C, E F, D, B
Primary reference	Receptor binding by a ferret-transmissible H5 avian influenza virus., Xiong X, Coombs PJ, Martin SR, Liu J, Xiao H, McCauley JW, Locher K, Walker PA, Collins PJ, Kawaoka Y, Skehel JJ, Gamblin SJ, Nature. 2013 Apr 24. doi: 10.1038/nature12144. PMID:23615615

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (485 Kb) [Save to disk] Biological Unit Coordinates (4bh1.pdb1.gz) 474 Kb LPC: Ligand-Protein Contacts for 4BH1 CSU: Contacts of Structural Units for 4BH1 Structure Factors (3905 Kb) Retrieve 4BH1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4BH1 from S2C, [Save to disk] Re-refined 4bh1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4BH1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4BH1

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4BH1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4bh1_C] [4bh1_A] [4bh1_E] [4bh1] [4bh1_D] [4bh1_B] [4bh1_F] SWISS-PROT database: Domain organization of by SWISSPFAM

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