4BIB Transferase date Apr 10, 2013
title Crystal Structures Of Ask1-Inhibitor Complexes
authors O.Singh, A.Shillings, P.Craggs, I.Wall, P.Rowland, T.Skarzynski, C P.Hardwick, R.Tanner, M.Blunt, D.R.Witty, K.J.Smith
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase 5
Chain: A, B
Fragment: Kinase Domain, Residues 660-977
Synonym: Apoptosis Signal-Regulating Kinase 1, Ask-1, Mapk Kinase 5, Mek Kinase 5, Mekk 5, Ask1;
Ec: 2.7.11.25
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pfastbac1
symmetry Space Group: P 65 2 2
R_factor 0.201 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.950 77.950 418.430 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.43 Å
ligand ACT, GOL, IEO enzyme Transferase E.C.2.7.11.25 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of ASK1-inhibtor complexes provide a platform for structure based drug design., Singh O, Shillings A, Craggs P, Wall I, Rowland P, Skarzynski T, Hobbs CI, Hardwick P, Tanner R, Blunt M, Witty DR, Smith KJ, Protein Sci. 2013 Jun 15. doi: 10.1002/pro.2298. PMID:23776076
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (4bib.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (4bib.pdb2.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 4BIB
  • CSU: Contacts of Structural Units for 4BIB
  • Structure Factors (403 Kb)
  • Retrieve 4BIB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BIB from S2C, [Save to disk]
  • Re-refined 4bib structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BIB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BIB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BIB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bib] [4bib_A] [4bib_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BIB: [S_TKc ] by SMART
  • Other resources with information on 4BIB
  • Community annotation for 4BIB at PDBWiki (http://pdbwiki.org)

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