4BIT Signaling Protein date Apr 13, 2013
title Solution Structure Of Cerebral Dopamine Neurotrophic Factor
authors C.Latge, K.M.S.Cabral, D.P.Raymundo, D.Foguel, T.Herrmann, M.S.Al
compound source
Molecule: Cerebral Dopamine Neurotrophic Factor
Chain: A
Fragment: Residues 27-187
Synonym: Armet-Like Protein 1, Conserved Dopamine Neurotrop Factor;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Brain
Cell: Neuron
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta B 4
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet25b
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A
  • growth factor activity


  • Primary referenceThe Solution Structure and Dynamics of Full-length Human Cerebral Dopamine Neurotrophic Factor and Its Neuroprotective Role Against alpha-Synuclein Oligomers., Latge C, Cabral KM, de Oliveira GA, Raymundo DP, Freitas JA, Johanson L, Romao LF, Palhano FL, Herrmann T, Almeida MS, Foguel D, J Biol Chem. 2015 Jul 6. pii: jbc.M115.662254. PMID:26149686
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (867 Kb) [Save to disk]
  • Biological Unit Coordinates (4bit.pdb1.gz) 44 Kb
  • CSU: Contacts of Structural Units for 4BIT
  • Original NMR restraints for 4BIT from PDB
  • Retrieve 4BIT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BIT from S2C, [Save to disk]
  • View 4BIT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BIT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BIT, from MSDmotif at EBI
  • Fold representative 4bit from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bit_A] [4bit]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BIT
  • Community annotation for 4BIT at PDBWiki (http://pdbwiki.org)

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