4BKJ Transferase date Apr 25, 2013
title Crystal Structure Of The Human Ddr1 Kinase Domain In Complex Imatinib
authors P.Canning, J.M.Elkins, S.Goubin, P.Mahajan, T.Krojer, M.Vollmar, F Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, A.Bullock
compound source
Molecule: Epithelial Discoidin Domain-Containing Receptor 1
Chain: A, B
Fragment: Kinase Domain, Resdiues 564-876
Synonym: Epithelial Discoidin Domain Receptor 1, Cd167 Anti Family Member A, Cell Adhesion Kinase, Discoidin Receptor T Kinase, Hgk2, Mammary Carcinoma Kinase 10, Mck-10, Protein- Kinase 3a, Protein-Tyrosine Kinase Rtk-6, Trk E, Tyrosine K Tyrosine-Protein Kinase Cak, Cd167a;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Lic-Bse
Other_details: Mammalian Gene Collection (Mgc)
symmetry Space Group: P 21 21 21
R_factor 0.156 R_Free 0.176
length a length b length c angle alpha angle beta angle gamma
60.074 60.074 180.575 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand EDO, STI enzyme Transferase E.C. BRENDA
A, B

Primary referenceStructural mechanisms determining inhibition of the collagen receptor DDR1 by selective and multi-targeted type II kinase inhibitors., Canning P, Tan L, Chu K, Lee SW, Gray NS, Bullock AN, J Mol Biol. 2014 Apr 22. pii: S0022-2836(14)00198-3. doi:, 10.1016/j.jmb.2014.04.014. PMID:24768818
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (213 Kb) [Save to disk]
  • Biological Unit Coordinates (4bkj.pdb1.gz) 105 Kb
  • Biological Unit Coordinates (4bkj.pdb2.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 4BKJ
  • CSU: Contacts of Structural Units for 4BKJ
  • Structure Factors (2581 Kb)
  • Retrieve 4BKJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BKJ from S2C, [Save to disk]
  • Re-refined 4bkj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BKJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BKJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BKJ, from MSDmotif at EBI
  • Fold representative 4bkj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bkj] [4bkj_A] [4bkj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BKJ: [TyrKc ] by SMART
  • Other resources with information on 4BKJ
  • Community annotation for 4BKJ at PDBWiki (http://pdbwiki.org)

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