4BKQ Oxidoreductase date Apr 29, 2013
title Enoyl-Acp Reductase From Yersinia Pestis (Wildtype)With Cofa
authors M.W.Hirschbeck, C.Neckles, P.J.Tonge, C.Kisker
compound source
Molecule: Putative Reductase Ypz3_3519
Chain: A
Synonym: Enoyl-Acp Reducatse, Trans-2-Enoyl-Coa Reductase
Ec: 1.3.1.-, 1.3.1.9
Engineered: Yes
Organism_scientific: Yersinia Pestis
Organism_taxid: 1035377
Strain: A1122
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet15b
symmetry Space Group: P 65 2 2
R_factor 0.1943 R_Free 0.2298
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.628 102.628 214.913 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand NAI enzyme Oxidoreductase E.C.1.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSelectivity of Pyridone- and Diphenyl Ether-Based Inhibitors for the Yersinia pestis FabV Enoyl-ACP Reductase., Neckles C, Pschibul A, Lai CT, Hirschbeck M, Kuper J, Davoodi S, Zou J, Liu N, Pan P, Shah S, Daryaee F, Bommineni GR, Lai C, Simmerling C, Kisker C, Tonge PJ, Biochemistry. 2016 May 31;55(21):2992-3006. doi: 10.1021/acs.biochem.5b01301., Epub 2016 May 17. PMID:27136302
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (4bkq.pdb1.gz) 271 Kb
  • LPC: Ligand-Protein Contacts for 4BKQ
  • CSU: Contacts of Structural Units for 4BKQ
  • Structure Factors (1082 Kb)
  • Retrieve 4BKQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BKQ from S2C, [Save to disk]
  • Re-refined 4bkq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BKQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BKQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BKQ, from MSDmotif at EBI
  • Fold representative 4bkq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bkq_A] [4bkq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BKQ
  • Community annotation for 4BKQ at PDBWiki (http://pdbwiki.org)

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