4BKR Oxidoreductase date Apr 29, 2013
title Enoyl-Acp Reductase From Yersinia Pestis (Wildtype, Removed Histag)With Cofactor Nadh
authors M.W.Hirschbeck, C.Neckles, P.J.Tonge, C.Kisker
compound source
Molecule: Putative Reductase Ypz3_3519
Chain: A
Synonym: Enoyl-Acp Reducatse, Trans-2-Enoyl-Coa Reductase
Ec: 1.3.1.-, 1.3.1.9
Engineered: Yes
Organism_scientific: Yersinia Pestis
Organism_taxid: 1035377
Strain: A1122
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 31 2 1
R_factor 0.1811 R_Free 0.2164
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.590 102.590 84.990 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand DMS, GOL, NA, NAI enzyme Oxidoreductase E.C.1.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSelectivity of Pyridone- and Diphenyl Ether-Based Inhibitors for the Yersinia pestis FabV Enoyl-ACP Reductase., Neckles C, Pschibul A, Lai CT, Hirschbeck M, Kuper J, Davoodi S, Zou J, Liu N, Pan P, Shah S, Daryaee F, Bommineni GR, Lai C, Simmerling C, Kisker C, Tonge PJ, Biochemistry. 2016 May 31;55(21):2992-3006. doi: 10.1021/acs.biochem.5b01301., Epub 2016 May 17. PMID:27136302
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (4bkr.pdb1.gz) 147 Kb
  • LPC: Ligand-Protein Contacts for 4BKR
  • CSU: Contacts of Structural Units for 4BKR
  • Structure Factors (1849 Kb)
  • Retrieve 4BKR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BKR from S2C, [Save to disk]
  • Re-refined 4bkr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BKR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BKR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BKR, from MSDmotif at EBI
  • Fold representative 4bkr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bkr_A] [4bkr]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BKR
  • Community annotation for 4BKR at PDBWiki (http://pdbwiki.org)

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