4BKU Oxidoreductase date Apr 29, 2013
title Enoyl-Acp Reductase Fabi From Burkholderia Pseudomallei With Nadh And Inhibitor Pt155
authors M.W.Hirschbeck, N.Liu, C.Neckles, P.J.Tonge, C.Kisker
compound source
Molecule: Enoyl-[Acyl-Carrier-Protein] Reductase [Nadh]
Chain: A
Synonym: Enoyl-Acp Reductase Fabi
Ec: 1.3.1.9
Engineered: Yes
Organism_scientific: Burkholderia Pseudomallei
Organism_taxid: 884204
Strain: Bp82
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet23b
symmetry Space Group: I 2 2 2
R_factor 0.137 R_Free 0.162
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.320 75.950 89.420 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.84 Å
ligand 1S5, NAI enzyme Oxidoreductase E.C.1.3.1.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRational Design of Broad-Spectrum Antibacterial Activity based on a Clinically Relevant Enoyl-ACP Reductase Inhibitor., Schiebel J, Chang A, Shah S, Lu Y, Liu L, Pan P, Hirschbeck MW, Tareilus M, Eltschkner S, Yu W, Cummings JE, Knudson SE, Bommineni GR, Walker SG, Slayden RA, Sotriffer CA, Tonge PJ, Kisker C, J Biol Chem. 2014 Apr 16. PMID:24739388
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (4bku.pdb1.gz) 343 Kb
  • LPC: Ligand-Protein Contacts for 4BKU
  • CSU: Contacts of Structural Units for 4BKU
  • Structure Factors (907 Kb)
  • Retrieve 4BKU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BKU from S2C, [Save to disk]
  • Re-refined 4bku structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BKU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BKU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BKU, from MSDmotif at EBI
  • Fold representative 4bku from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bku] [4bku_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BKU
  • Community annotation for 4BKU at PDBWiki (http://pdbwiki.org)

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