4BKW Receptor date Apr 30, 2013
title Crystal Structure Of The C-Terminal Region Of Human Zfyve9
authors E.Williams, T.Krojer, M.Vollmar, L.Shrestha, F.Von Delft, C.H.Arr A.M.Edwards, C.Bountra, A.Bullock
compound source
Molecule: Zinc Finger Fyve Domain-Containing Protein 9
Chain: A
Fragment: Protein Interacting Domain, Residues 895-1425
Synonym: Mothers Against Decapentaplegic Homolog-Interactin Madh-Interacting Protein, Novel Serine Protease, Nsp, Recep Activation Anchor, Hsara, Smad Anchor For Receptor Activati Zfyve9c;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
Other_details: Mgm
symmetry Space Group: P 63 2 2
R_factor 0.204 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.751 113.751 155.098 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.53 Å
ligand EDO, PG4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (4bkw.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 4BKW
  • CSU: Contacts of Structural Units for 4BKW
  • Structure Factors (387 Kb)
  • Retrieve 4BKW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BKW from S2C, [Save to disk]
  • Re-refined 4bkw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4BKW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4BKW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BKW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bkw] [4bkw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BKW: [DUF3480 ] by SMART
    • Other resources with information on 4BKW
  • Community annotation for 4BKW at PDBWiki (http://pdbwiki.org)

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