4BKY Transferase date Apr 30, 2013
title Crystal Structure Of Unphosphorylated Maternal Embryonic Leu Zipper Kinase (Melk) In Complex With Pyrrolopyrazole Inhibi
authors G.Canevari, S.Re Depaolini, U.Cucchi, B.Forte, P.Carpinelli, J.A.
compound source
Molecule: Maternal Embryonic Leucine Zipper Kinase
Chain: A
Fragment: Kinase And Uba Domains, Residues 2-340
Synonym: Hmelk, Protein Kinase Eg3, Peg3 Kinase, Protein Ki Hpk38, Tyrosine-Protein Kinase Melk;
Ec: 2.7.11.1, 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.979 64.266 92.649 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.83 Å
ligand 82B, UNX enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insight into Maternal Embryonic Leucine zipper Kinase (MELK) conformation and inhibition towards structure-based drug design., Canevari G, Re Depaolini S, Cucchi U, Bertrand JA, Casale E, Perrera C, Forte B, Carpinelli P, Felder ER, Biochemistry. 2013 Aug 5. PMID:23914841
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (4bky.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 4BKY
  • CSU: Contacts of Structural Units for 4BKY
  • Structure Factors (433 Kb)
  • Retrieve 4BKY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BKY from S2C, [Save to disk]
  • Re-refined 4bky structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BKY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BKY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BKY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bky] [4bky_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BKY: [S_TKc ] by SMART
  • Other resources with information on 4BKY
  • Community annotation for 4BKY at PDBWiki (http://pdbwiki.org)

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