4BLF Dna Binding Protein date May 02, 2013
title Variable Internal Flexibility Characterizes The Helical Caps By Agrobacterium Vire2 Protein On Single-Stranded Dna.
authors T.A.M.Bharat, D.Zbaida, M.Eisenstein, Z.Frankenstein, T.Mehlman, C.O.S.Sorzano, Y.Barak, S.Albeck, J.A.G.Briggs, S.G.Wolf, M.Elba
compound source
Molecule: Single-Strand Dna-Binding Protein
Chain: A
Fragment: N-Terminal Domain, Residues 112-337
Synonym: 63.5 Kda Virulence Protein, Vire2 Protein
Engineered: Yes
 Organism_scientific: Agrobacterium Tumefaciens
Organism_taxid: 358
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 20.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceVariable Internal Flexibility Characterizes the Helical Capsid Formed by Agrobacterium VirE2 Protein on Single-Stranded DNA., Bharat TA, Zbaida D, Eisenstein M, Frankenstein Z, Mehlman T, Weiner L, Sorzano CO, Barak Y, Albeck S, Briggs JA, Wolf SG, Elbaum M, Structure. 2013 Jun 11. pii: S0969-2126(13)00157-3. doi:, 10.1016/j.str.2013.04.027. PMID:23769668
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (4blf.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 4BLF
  • Retrieve 4BLF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BLF from S2C, [Save to disk]
    • View 4BLF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4BLF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BLF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4blf_A] [4blf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4BLF
  • Community annotation for 4BLF at PDBWiki (http://pdbwiki.org)

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