4BLP Hydrolase date May 04, 2013
title P4 Protein From Bacteriophage Phi13
authors K.El Omari, C.Meier, D.Kainov, G.Sutton, J.M.Grimes, M.M.Poranen, D.H.Bamford, R.Tuma, D.I.Stuart, E.J.Mancini
compound source
Molecule: Packaging Enzyme P4
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Pseudomonas Phage Phi13
Organism_common: Bacteriophage Phi13
Organism_taxid: 134554
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.1630 R_Free 0.1878
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.219 116.239 149.771 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand FLC, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceTracking in atomic detail the functional specializations in viral RecA helicases that occur during evolution., El Omari K, Meier C, Kainov D, Sutton G, Grimes JM, Poranen MM, Bamford DH, Tuma R, Stuart DI, Mancini EJ, Nucleic Acids Res. 2013 Aug 11. PMID:23939620
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (530 Kb) [Save to disk]
  • Biological Unit Coordinates (4blp.pdb1.gz) 521 Kb
  • LPC: Ligand-Protein Contacts for 4BLP
  • CSU: Contacts of Structural Units for 4BLP
  • Structure Factors (2571 Kb)
  • Retrieve 4BLP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BLP from S2C, [Save to disk]
  • Re-refined 4blp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4BLP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4BLP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BLP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4blp_E] [4blp_F] [4blp] [4blp_C] [4blp_D] [4blp_A] [4blp_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4BLP
  • Community annotation for 4BLP at PDBWiki (http://pdbwiki.org)

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