4BOQ	Hydrolase	date	May 22, 2013
title	Structure Of Otud2 Otu Domain
authors	T.E.T.Mevissen, M.K.Hospenthal, P.P.Geurink, P.R.Elliott, M.Akut N.Arnaudo, R.Ekkebus, Y.Kulathu, T.Wauer, F.El Oualid, S.M.V.Fre H.Ovaa, D.Komander
compound		source
Molecule: Ubiquitin Thioesterase Otu1 Chain: A Fragment: Residues 132-314 Synonym: Duba-8, Hiv-1-Induced Protease 7, Hin-7, Hshin7, O Domain-Containing Protein 2, Otud2; Ec: 3.4.19.12 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Rosetta Placi
symmetry	Space Group: P 31 2 1	R_factor 0.1709 R_Free 0.1950
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.670 60.670 86.180 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.47 Å
ligand	GOL	enzyme	Hydrolase E.C.3.4.19.12 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	OTU Deubiquitinases Reveal Mechanisms of Linkage Specificity and Enable Ubiquitin Chain Restriction Analysis., Mevissen TE, Hospenthal MK, Geurink PP, Elliott PR, Akutsu M, Arnaudo N, Ekkebus R, Kulathu Y, Wauer T, El Oualid F, Freund SM, Ovaa H, Komander D, Cell. 2013 Jul 3;154(1):169-84. doi: 10.1016/j.cell.2013.05.046. PMID:23827681

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk] Biological Unit Coordinates (4boq.pdb1.gz) 126 Kb LPC: Ligand-Protein Contacts for 4BOQ CSU: Contacts of Structural Units for 4BOQ Structure Factors (1160 Kb) Retrieve 4BOQ in mmCIF format [Save to disk] Re-refined 4boq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4BOQ in 3D

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Visual 3D analysis of 4BOQ

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4BOQ, from MSDmotif at EBI Fold representative 4boq from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4boq] [4boq_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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