4BPC Hydrolase date May 24, 2013
title Structure Of The Catalytic Domain Of Protein Tyrosine Phosph Sigma In The Sulfenic Acid Form
authors T.J.Jeon, P.N.Chien, H.J.Chun, S.E.Ryu
compound source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase S
Chain: A
Fragment: Cytoplasmic Phosphatase Domains, Residues 1367-19
Synonym: R-Ptp-S, Receptor-Type Tyrosine-Protein Phosphatas
Ec: 3.1.3.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28a(+)
symmetry Space Group: P 61
R_factor 0.178 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.672 94.672 123.423 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand CSO enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the catalytic domain of protein tyrosine phosphatase sigma in the sulfenic acid form., Jeon TJ, Chien PN, Chun HJ, Ryu SE, Mol Cells. 2013 May 30. PMID:23820885
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (4bpc.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 4BPC
  • CSU: Contacts of Structural Units for 4BPC
  • Structure Factors (514 Kb)
  • Retrieve 4BPC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BPC from S2C, [Save to disk]
  • Re-refined 4bpc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BPC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BPC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BPC, from MSDmotif at EBI
  • Fold representative 4bpc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bpc] [4bpc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BPC: [PTPc ] by SMART
  • Other resources with information on 4BPC
  • Community annotation for 4BPC at PDBWiki (http://pdbwiki.org)

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