4BPC Hydrolase date May 24, 2013
title Structure Of The Catalytic Domain Of Protein Tyrosine Phosph Sigma In The Sulfenic Acid Form
authors T.J.Jeon, P.N.Chien, H.J.Chun, S.E.Ryu
compound source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase S
Chain: A
Fragment: Cytoplasmic Phosphatase Domains, Residues 1367-19
Synonym: R-Ptp-S, Receptor-Type Tyrosine-Protein Phosphatas
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28a(+)
symmetry Space Group: P 61
R_factor 0.178 R_Free 0.222
length a length b length c angle alpha angle beta angle gamma
94.672 94.672 123.423 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand CSO enzyme Hydrolase E.C. BRENDA

Primary referenceStructure of the catalytic domain of protein tyrosine phosphatase sigma in the sulfenic acid form., Jeon TJ, Chien PN, Chun HJ, Ryu SE, Mol Cells. 2013 May 30. PMID:23820885
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (4bpc.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 4BPC
  • CSU: Contacts of Structural Units for 4BPC
  • Structure Factors (514 Kb)
  • Retrieve 4BPC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BPC from S2C, [Save to disk]
  • Re-refined 4bpc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BPC in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BPC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BPC, from MSDmotif at EBI
  • Fold representative 4bpc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bpc] [4bpc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BPC: [PTPc ] by SMART
  • Other resources with information on 4BPC
  • Community annotation for 4BPC at PDBWiki (http://pdbwiki.org)

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