4BQ7 Cell Adhesion date May 30, 2013
title Crystal Structure Of The Rgmb-Neo1 Complex Form 2
authors C.H.Bell, E.Healey, S.Van Erp, B.Bishop, C.Tang, R.J.C.Gilbert, A.R.Aricescu, R.J.Pasterkamp, C.Siebold
compound source
Molecule: Neogenin
Chain: A, B
Fragment: Fn-Type III Domains 5 And 6, Residues 883-1133
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phlsec

Molecule: Rgm Domain Family Member B
Chain: C, E
Fragment: Residues 50-168
Synonym: Drg11-Responsive Axonal Guidance And Outgrowth Of Dragon;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phlsec

Molecule: Rgm Domain Family Member B
Chain: D, F
Fragment: Residues 169-410
Synonym: Drg11-Responsive Axonal Guidance And Outgrowth Of
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phlsec
symmetry Space Group: P 32 1 2
R_factor 0.254 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.690 109.690 187.930 90.00 90.00 120.00
method X-Ray Diffractionresolution 6.60 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


F, D, C, E


Primary referenceStructure of the Repulsive Guidance Molecule (RGM)-Neogenin Signaling Hub., Bell CH, Healey E, van Erp S, Bishop B, Tang C, Gilbert RJ, Aricescu AR, Pasterkamp RJ, Siebold C, Science. 2013 Jun 6. PMID:23744777
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (257 Kb) [Save to disk]
  • Biological Unit Coordinates (4bq7.pdb1.gz) 125 Kb
  • Biological Unit Coordinates (4bq7.pdb2.gz) 126 Kb
  • CSU: Contacts of Structural Units for 4BQ7
  • Structure Factors (39 Kb)
  • Retrieve 4BQ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BQ7 from S2C, [Save to disk]
  • Re-refined 4bq7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BQ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BQ7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BQ7, from MSDmotif at EBI
  • Fold representative 4bq7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bq7_C] [4bq7_F] [4bq7_B] [4bq7] [4bq7_D] [4bq7_A] [4bq7_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BQ7: [FN3 ] by SMART
  • Other resources with information on 4BQ7
  • Community annotation for 4BQ7 at PDBWiki (http://pdbwiki.org)

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