4BQ9	Cell Adhesion	date	May 30, 2013
title	Crystal Structure Of The Fn5 And Fn6 Domains Of Neo1, Form 1
authors	C.H.Bell, E.Healey, S.Van Erp, B.Bishop, C.Tang, R.J.C.Gilbert, A.R.Aricescu, R.J.Pasterkamp, C.Siebold
compound		source
Molecule: Neogenin Chain: A, B Fragment: Fn-Type III Domains 5 And 6, Residues 883-1083 Engineered: Yes Other_details: N-Linked Glycosylation At N940		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_plasmid: Phlsec
symmetry	Space Group: P 31 2 1	R_factor 0.205 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.551 103.551 110.776 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.91 Å
ligand	NAG	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of the Repulsive Guidance Molecule (RGM)-Neogenin Signaling Hub., Bell CH, Healey E, van Erp S, Bishop B, Tang C, Gilbert RJ, Aricescu AR, Pasterkamp RJ, Siebold C, Science. 2013 Jun 6. PMID:23744777

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk] Biological Unit Coordinates (4bq9.pdb1.gz) 69 Kb Biological Unit Coordinates (4bq9.pdb2.gz) 64 Kb LPC: Ligand-Protein Contacts for 4BQ9 CSU: Contacts of Structural Units for 4BQ9 Structure Factors (195 Kb) Retrieve 4BQ9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4BQ9 from S2C, [Save to disk] Re-refined 4bq9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4BQ9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4BQ9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4BQ9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4bq9] [4bq9_B] [4bq9_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4BQ9: [FN3 ] by SMART

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