4BRY Cell Cycle date Jun 06, 2013
title The Idas:Geminin Heterodimeric Parallel Coiled-Coil
authors C.Caillat, A.Perrakis
compound source
Molecule: Geminin
Chain: A
Fragment: Coiled-Coil, Residues 83-160
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-Nki-Lic

Molecule: Multicilin
Chain: B
Fragment: Coiled-Coil, Residues 173-245
Synonym: Multiciliate Differentiation And Dna Synthesis-Ass Cell Cycle Protein, Protein Idas, Idas;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet-22b
symmetry Space Group: I 41 2 2
R_factor 0.2026 R_Free 0.2260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.799 117.799 103.462 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.89 Å
ligand PG4, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceThe Geminin and Idas coiled coils preferentially form a heterodimer that inhibits Geminin function in DNA replication licensing., Caillat C, Pefani ED, Gillespie PJ, Taraviras S, Blow JJ, Lygerou Z, Perrakis A, J Biol Chem. 2013 Oct 2. PMID:24064211
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (4bry.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 4BRY
  • CSU: Contacts of Structural Units for 4BRY
  • Structure Factors (124 Kb)
  • Retrieve 4BRY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BRY from S2C, [Save to disk]
  • Re-refined 4bry structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BRY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BRY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BRY, from MSDmotif at EBI
  • Fold representative 4bry from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bry_B] [4bry] [4bry_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BRY
  • Community annotation for 4BRY at PDBWiki (http://pdbwiki.org)

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