4BS2 Transcription date Jun 06, 2013
title Nmr Structure Of Human Tdp-43 Tandem Rrms In Complex With Ug
authors P.J.Lukavsky, D.Daujotyte, J.R.Tollervey, J.Ule, C.Stuani, E.Bura F.E.Baralle, F.F.Damberger, F.H.T.Allain
compound source
Molecule: Tar Dna-Binding Protein 43
Chain: A
Fragment: Rna Binding Domain, Residues 102-269
Synonym: Tdp-43, Tdp-43 Tandem Rrms
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Ril
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet-28a

Molecule: 5'-R(Gpupgpupgpapapupgpapapup)-3'
Chain: B
Synonym: Ug-Rich Rna

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular basis of UG-rich RNA recognition by the human splicing factor TDP-43., Lukavsky PJ, Daujotyte D, Tollervey JR, Ule J, Stuani C, Buratti E, Baralle FE, Damberger FF, Allain FH, Nat Struct Mol Biol. 2013 Nov 17. doi: 10.1038/nsmb.2698. PMID:24240615
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1229 Kb) [Save to disk]
  • Biological Unit Coordinates (4bs2.pdb1.gz) 54 Kb
  • CSU: Contacts of Structural Units for 4BS2
  • Original NMR restraints for 4BS2 from PDB
  • Retrieve 4BS2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BS2 from S2C, [Save to disk]
  • View 4BS2 in 3D
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  • Visual 3D analysis of 4BS2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BS2, from MSDmotif at EBI
  • Fold representative 4bs2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bs2_B] [4bs2_A] [4bs2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BS2: [RRM ] by SMART
  • Other resources with information on 4BS2
  • Community annotation for 4BS2 at PDBWiki (http://pdbwiki.org)

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