4BSK Crystal structure of VEGF-C in complex with VEGFR-3 domains D1-2 date
authors Leppanen, V.M., Tvorogov, D., Kisko, K., Prota, A.E., Jeltsch, M., Anisimov, A., Markovic-Mueller, S., Stuttfeld, E., Goldie, K.N., Ballmer-Hofer, K., Alitalo, K.
compound source
symmetry
R_factor
R_Free 0.3718
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.20
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


C


Primary referenceStructural and mechanistic insights into VEGF receptor 3 ligand binding and activation., Leppanen VM, Tvorogov D, Kisko K, Prota AE, Jeltsch M, Anisimov A, Markovic-Mueller S, Stuttfeld E, Goldie KN, Ballmer-Hofer K, Alitalo K, Proc Natl Acad Sci U S A. 2013 Jul 22. PMID:23878260
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (4bsk.pdb1.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 4BSK
  • CSU: Contacts of Structural Units for 4BSK
  • Structure Factors (48 Kb)
  • Retrieve 4BSK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BSK from S2C, [Save to disk]
  • Re-refined 4bsk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BSK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BSK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BSK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bsk_C] [4bsk_A] [4bsk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4BSK: [GHA] [IG] [PDGF ] by SMART
  • Other resources with information on 4BSK
  • Community annotation for 4BSK at PDBWiki (http://pdbwiki.org)

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