4BTF Transferase date Jun 16, 2013
title Structure Of Mlkl
authors P.E.Czabotar, J.M.Murphy
compound source
Molecule: Mixed Lineage Kinase Domain-Like Protein
Chain: A
Synonym: Mlkl
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector_type: Plasmid
Expression_system_vector: Pfastbac Htb
symmetry Space Group: P 21 21 21
R_factor 0.207 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.400 78.300 162.938 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand EDO, FMT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • JUN kinase kinase kinase act...


  • Primary referenceThe Pseudokinase MLKL Mediates Necroptosis via a Molecular Switch Mechanism., Murphy JM, Czabotar PE, Hildebrand JM, Lucet IS, Zhang JG, Alvarez-Diaz S, Lewis R, Lalaoui N, Metcalf D, Webb AI, Young SN, Varghese LN, Tannahill GM, Hatchell EC, Majewski IJ, Okamoto T, Dobson RC, Hilton DJ, Babon JJ, Nicola NA, Strasser A, Silke J, Alexander WS, Immunity. 2013 Sep 4. pii: S1074-7613(13)00348-8. doi:, 10.1016/j.immuni.2013.06.018. PMID:24012422
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (4btf.pdb1.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 4BTF
  • CSU: Contacts of Structural Units for 4BTF
  • Structure Factors (125 Kb)
  • Retrieve 4BTF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BTF from S2C, [Save to disk]
  • Re-refined 4btf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BTF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BTF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BTF, from MSDmotif at EBI
  • Fold representative 4btf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4btf_A] [4btf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BTF: [STYKc ] by SMART
  • Other resources with information on 4BTF
  • Community annotation for 4BTF at PDBWiki (http://pdbwiki.org)

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