4BU2 60S ribosomal protein L27A histidine hydroxylase (MINA53) in complex with Ni(II) and 2-oxoglutarate (2OG) date
authors Chowdhury, R., Clifton, I.J., McDonough, M.A., Ng, S.S., Pilka, E., Oppermann, U., Schofield, C.J.
compound source
symmetry
R_factor
R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.78
ligand AKG, EDO, MSE, NI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • transcription corepressor ac...


    • Primary referenceRibosomal oxygenases are structurally conserved from prokaryotes to humans., Chowdhury R, Sekirnik R, Brissett NC, Krojer T, Ho CH, Ng SS, Clifton IJ, Ge W, Kershaw NJ, Fox GC, Muniz JR, Vollmar M, Phillips C, Pilka ES, Kavanagh KL, von Delft F, Oppermann U, McDonough MA, Doherty AJ, Schofield CJ, Nature. 2014 May 11. doi: 10.1038/nature13263. PMID:24814345
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (4bu2.pdb1.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 4BU2
  • CSU: Contacts of Structural Units for 4BU2
  • Structure Factors (1521 Kb)
  • Retrieve 4BU2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BU2 from S2C, [Save to disk]
  • Re-refined 4bu2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4BU2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4BU2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BU2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bu2_A] [4bu2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BU2: [JmjC ] by SMART
    • Other resources with information on 4BU2
  • Community annotation for 4BU2 at PDBWiki (http://pdbwiki.org)

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