4BUR Crystal structure of the reduced human Apoptosis inducing factor complexed with NAD date
authors Martinez-Julvez, M., Herguedas, B., Hermoso, J.A., Ferreira, P., Villanueva, R., Medina, M.
compound source
symmetry
R_factor
R_Free 0.22973
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.88
ligand FAD, NAD, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural insights into the coenzyme mediated monomer-dimer transition of the pro-apoptotic apoptosis inducing factor., Ferreira P, Villanueva R, Martinez-Julvez M, Herguedas B, Marcuello C, Fernandez-Silva P, Cabon L, Hermoso JA, Lostao A, Susin SA, Medina M, Biochemistry. 2014 Jul 1;53(25):4204-15. doi: 10.1021/bi500343r. Epub 2014 Jun, 20. PMID:24914854
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (297 Kb) [Save to disk]
  • Biological Unit Coordinates (4bur.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (4bur.pdb2.gz) 77 Kb
  • Biological Unit Coordinates (4bur.pdb3.gz) 76 Kb
  • Biological Unit Coordinates (4bur.pdb4.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 4BUR
  • CSU: Contacts of Structural Units for 4BUR
  • Structure Factors (2674 Kb)
  • Retrieve 4BUR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BUR from S2C, [Save to disk]
  • Re-refined 4bur structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BUR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BUR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BUR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bur] [4bur_A] [4bur_D] [4bur_B] [4bur_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BUR: [AIF_C ] by SMART
  • Other resources with information on 4BUR
  • Community annotation for 4BUR at PDBWiki (http://pdbwiki.org)

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