4BWM Transferase Dna Rna date Jul 03, 2013
title Klentaq Mutant In Complex With A Rnadna Hybrid
authors N.Blatter, K.Bergen, W.Welte, K.Diederichs, A.Marx
compound source
Molecule: Dna Polymerase I, Thermostable
Chain: A
Fragment: Klenow Fragment, Residues 293-832
Synonym: Taq Polymerase 1
Ec: 2.7.7.7
Engineered: Yes
Mutation: Yes
Organism_scientific: Thermus Aquaticus
Organism_taxid: 271
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgdr11

Molecule: 5'-D(Gpapcpcpapcpgpgpcpgpcpdocp)-3'
Chain: B
Synonym: Primer
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 5'-R(Apapapgpgpgpcpgpcpcpgpupgpgpu
Chain: G
Synonym: Template
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 2
R_factor 0.168 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
143.192 86.282 63.094 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand CL, DCT, DOC, FMT, MG enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and Function of an RNA-Reading Thermostable DNA Polymerase., Blatter N, Bergen K, Nolte O, Welte W, Diederichs K, Mayer J, Wieland M, Marx A, Angew Chem Int Ed Engl. 2013 Sep 17. doi: 10.1002/anie.201306655. PMID:24106012
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (218 Kb) [Save to disk]
  • Biological Unit Coordinates (4bwm.pdb1.gz) 211 Kb
  • LPC: Ligand-Protein Contacts for 4BWM
  • CSU: Contacts of Structural Units for 4BWM
  • Structure Factors (429 Kb)
  • Retrieve 4BWM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BWM from S2C, [Save to disk]
  • Re-refined 4bwm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BWM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BWM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BWM, from MSDmotif at EBI
  • Fold representative 4bwm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bwm_A] [4bwm_G] [4bwm_B] [4bwm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BWM: [POLAc ] by SMART
  • Other resources with information on 4BWM
  • Community annotation for 4BWM at PDBWiki (http://pdbwiki.org)

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