4BX8	Protein Transport	date	Jul 09, 2013
title	Human Vps33a
authors	S.C.Graham, L.Wartosch, S.R.Gray, E.J.Scourfield, J.E.Deane, J.P. D.J.Owen
compound		source
Molecule: Vacuolar Protein Sorting-Associated Protein 33a Chain: A, B Synonym: Hvps33a, Vps33a Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Popt
symmetry	Space Group: P 1 21 1	R_factor 0.197 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.470 125.010 83.280 90.00 115.33 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	CL	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis of Vps33A recruitment to the human HOPS complex by Vps16., Graham SC, Wartosch L, Gray SR, Scourfield EJ, Deane JE, Luzio JP, Owen DJ, Proc Natl Acad Sci U S A. 2013 Jul 30. PMID:23901104

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (387 Kb) [Save to disk] Biological Unit Coordinates (4bx8.pdb1.gz) 193 Kb Biological Unit Coordinates (4bx8.pdb2.gz) 192 Kb LPC: Ligand-Protein Contacts for 4BX8 CSU: Contacts of Structural Units for 4BX8 Structure Factors (647 Kb) Retrieve 4BX8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4BX8 from S2C, [Save to disk] Re-refined 4bx8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4BX8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4BX8

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4BX8, from MSDmotif at EBI Fold representative 4bx8 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4bx8_A] [4bx8_B] [4bx8] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4BX8

Community annotation for 4BX8 at PDBWiki (http://pdbwiki.org)

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