4BXO Hydrolase Dna date Jul 15, 2013
title Architecture And Dna Recognition Elements Of The Fanconi Ane Faap24 Complex
authors R.Coulthard, A.Deans, P.Swuec, M.Bowles, A.Purkiss, A.Costa, S.Wes N.Mcdonald
compound source
Molecule: Fanconi Anemia Group M Protein
Chain: A
Synonym: Protein Facm, Atp-Dependent Rna Helicase Fancm, Fa Mia-Associated Polypeptide Of 250 Kda, Faap250, Protein Hef Og, Fancm;
Ec: 3.6.4.13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Fb810
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-Kg

Molecule: Fanconi Anemia-Associated Protein Of 24 Kda
Chain: B
Synonym: Faap24
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Fb810
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-Kg

Molecule: 5'-D(Tpcpapgpcpaptpcpaptpcp)-3'
Chain: H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 5'-D(Gpaptpgpaptpgpcptpgpcp)-3'
Chain: I
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 41 21 2
R_factor 0.204 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
125.100 125.100 74.760 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand CA enzyme Hydrolase E.C.3.6.4.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceArchitecture and DNA Recognition Elements of the Fanconi Anemia FANCM-FAAP24 Complex., Coulthard R, Deans AJ, Swuec P, Bowles M, Costa A, West SC, McDonald NQ, Structure. 2013 Aug 6. pii: S0969-2126(13)00255-4. doi:, 10.1016/j.str.2013.07.006. PMID:23932590
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (4bxo.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 4BXO
  • CSU: Contacts of Structural Units for 4BXO
  • Structure Factors (421 Kb)
  • Retrieve 4BXO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BXO from S2C, [Save to disk]
  • Re-refined 4bxo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BXO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BXO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BXO, from MSDmotif at EBI
  • Fold representative 4bxo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bxo_A] [4bxo] [4bxo_H] [4bxo_B] [4bxo_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BXO: [ERCC4 ] by SMART
  • Other resources with information on 4BXO
  • Community annotation for 4BXO at PDBWiki (http://pdbwiki.org)

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