4BZ5 Crystal structure of Schistosoma mansoni HDAC8 date
authors Marek, M., Romier, C.
compound source
symmetry
R_factor
R_Free 0.1883
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.79
ligand K, TLA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural Basis for the Inhibition of Histone Deacetylase 8 (HDAC8), a Key Epigenetic Player in the Blood Fluke, Marek M, Kannan S, Hauser AT, Moraes Mourao M, Caby S, Cura V, Stolfa DA, Schmidtkunz K, Lancelot J, Andrade L, Renaud JP, Oliveira G, Sippl W, Jung M, Cavarelli J, Pierce RJ, Romier C, PLoS Pathog. 2013 Sep;9(9):e1003645. Epub 2013 Sep 26. PMID:24086136
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (560 Kb) [Save to disk]
  • Biological Unit Coordinates (4bz5.pdb1.gz) 139 Kb
  • Biological Unit Coordinates (4bz5.pdb2.gz) 144 Kb
  • Biological Unit Coordinates (4bz5.pdb3.gz) 145 Kb
  • Biological Unit Coordinates (4bz5.pdb4.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 4BZ5
  • CSU: Contacts of Structural Units for 4BZ5
  • Structure Factors (2145 Kb)
  • Retrieve 4BZ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BZ5 from S2C, [Save to disk]
  • Re-refined 4bz5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BZ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BZ5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BZ5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bz5_C] [4bz5_A] [4bz5_D] [4bz5_B] [4bz5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4BZ5
  • Community annotation for 4BZ5 at PDBWiki (http://pdbwiki.org)

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