4C0M Crystal Structure of the N terminal domain of wild type TRIF (TIR- domain-containing adapter-inducing interferon-beta) date
authors Ullah, M.O., Ve, T., Mangan, M., Alaidarous, M., Sweet, M.J., Mansell, A., Kobe, B.
compound source
symmetry
R_factor
R_Free 0.2912
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe TLR signalling adaptor TRIF/TICAM-1 has an N-terminal helical domain with structural similarity to IFIT proteins., Ullah MO, Ve T, Mangan M, Alaidarous M, Sweet MJ, Mansell A, Kobe B, Acta Crystallogr D Biol Crystallogr. 2013 Dec;69(Pt 12):2420-30. doi:, 10.1107/S0907444913022385. Epub 2013 Nov 19. PMID:24311583
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk]
  • Biological Unit Coordinates (4c0m.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (4c0m.pdb2.gz) 44 Kb
  • Biological Unit Coordinates (4c0m.pdb3.gz) 44 Kb
  • Biological Unit Coordinates (4c0m.pdb4.gz) 45 Kb
  • CSU: Contacts of Structural Units for 4C0M
  • Structure Factors (245 Kb)
  • Retrieve 4C0M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4C0M from S2C, [Save to disk]
  • Re-refined 4c0m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4C0M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4C0M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4C0M, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4c0m_B] [4c0m] [4c0m_C] [4c0m_A] [4c0m_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4C0M
  • Community annotation for 4C0M at PDBWiki (http://pdbwiki.org)

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