4C2X Transferase date Aug 20, 2013
title Human N-Myristoyltransferase Isoform 2 (Nmt2)
authors E.Thinon, R.A.Serwa, J.A.Brannigan, U.Brassat, M.H.Wright, W.P.He A.J.Wilkinson, D.J.Mann, E.W.Tate
compound source
Molecule: Glycylpeptide N-Tetradecanoyltransferase 2
Chain: A
Fragment: Residues 112-498
Synonym: Glycylpeptide N-Tetradecanoyltransferase,
Myristoyl-Coa\: Protein N-Myristoyltransferase 2, Nmt 2, Pe N-Myristoyltransferase 2, Type II N-Myristoyltransferase;
Ec: 2.3.1.97
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Prares
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28 Derivative
symmetry Space Group: P 21 21 21
R_factor 0.21823 R_Free 0.28812
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.700 72.320 114.690 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.33 Å
ligand MG, NHW enzyme Transferase E.C.2.3.1.97 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceGlobal profiling of co- and post-translationally N-myristoylated proteomes in human cells., Thinon E, Serwa RA, Broncel M, Brannigan JA, Brassat U, Wright MH, Heal WP, Wilkinson AJ, Mann DJ, Tate EW, Nat Commun. 2014 Sep 26;5:4919. doi: 10.1038/ncomms5919. PMID:25255805
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (4c2x.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 4C2X
  • CSU: Contacts of Structural Units for 4C2X
  • Structure Factors (955 Kb)
  • Retrieve 4C2X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4C2X from S2C, [Save to disk]
  • Re-refined 4c2x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4C2X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4C2X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4C2X, from MSDmotif at EBI
  • Fold representative 4c2x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4c2x_A] [4c2x]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4C2X
  • Community annotation for 4C2X at PDBWiki (http://pdbwiki.org)

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