4C3I Structure of 14-subunit RNA polymerase I at 3.0 A resolution, crystal form C2-100 date
authors Fernandez-Tornero, C., Moreno-Morcillo, M., Rashid, U.J., Taylor, N.M.I., Ruiz, F.M., Gruene, T., Legrand, P., Steuerwald, U., Muller, C.W.
compound source
symmetry
R_factor
R_Free 0.2307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand MG, MPD, SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E
  • RNA-directed 5'-3' RNA polym...


    • F
  • RNA-directed 5'-3' RNA polym...


    • G


    H
  • RNA-directed 5'-3' RNA polym...


    • I


    J
  • RNA-directed 5'-3' RNA polym...

  • DNA-directed RNA polymerase ...
    • K


    L
  • RNA-directed 5'-3' RNA polym...


    • M


    N


    Primary referenceCrystal structure of the 14-subunit RNA polymerase I., Fernandez-Tornero C, Moreno-Morcillo M, Rashid UJ, Taylor NM, Ruiz FM, Gruene T, Legrand P, Steuerwald U, Muller CW, Nature. 2013 Oct 31;502(7473):644-9. doi: 10.1038/nature12636. Epub 2013 Oct 23. PMID:24153184
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1483 Kb) [Save to disk]
  • Biological Unit Coordinates (4c3i.pdb1.gz) 1471 Kb
  • LPC: Ligand-Protein Contacts for 4C3I
  • CSU: Contacts of Structural Units for 4C3I
  • Structure Factors (2167 Kb)
  • Retrieve 4C3I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4C3I from S2C, [Save to disk]
  • Re-refined 4c3i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4C3I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4C3I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4C3I, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4c3i_E] [4c3i_N] [4c3i_A] [4c3i_G] [4c3i_B] [4c3i_L] [4c3i_F] [4c3i_C] [4c3i] [4c3i_J] [4c3i_H] [4c3i_M] [4c3i_K] [4c3i_I] [4c3i_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4C3I: [RNA_pol_Rpb6] [RPOL8c] [RPOL9] [RPOLA_N] [RPOLCX] [RPOLD] [ZnF_C2C2 ] by SMART
    • Other resources with information on 4C3I
  • Community annotation for 4C3I at PDBWiki (http://pdbwiki.org)

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