4C59 Structure of GAK kinase in complex with nanobody (NbGAK_4) date
authors Chaikuad, A., Keates, T., Allerston, C.K., Gileadi, O., Delft, F.von., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Knapp, S., Muller-Knapp, S.
compound source
symmetry
R_factor
R_Free 0.26163
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand FEF enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of cyclin G-associated kinase (GAK) trapped in different conformations using nanobodies., Chaikuad A, Keates T, Vincke C, Kaufholz M, Zenn M, Zimmermann B, Gutierrez C, Zhang RG, Hatzos-Skintges C, Joachimiak A, Muyldermans S, Herberg FW, Knapp S, Muller S, Biochem J. 2014 Apr 1;459(1):59-69. doi: 10.1042/BJ20131399. PMID:24438162
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (4c59.pdb1.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 4C59
  • CSU: Contacts of Structural Units for 4C59
  • Structure Factors (173 Kb)
  • Retrieve 4C59 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4C59 from S2C, [Save to disk]
  • Re-refined 4c59 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4C59 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4C59
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4C59, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4c59_A] [4c59] [4c59_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4C59: [IGv] [STYKc ] by SMART
    • Other resources with information on 4C59
  • Community annotation for 4C59 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science