4C6C Hydrolase date Sep 18, 2013
title Crystal Structure Of The Dihydroorotase Domain Of Human Cad In Apo-Form Obtained Recombinantly From Hek293 Cells.
authors S.Ramon-Maiques, N.Lallous, A.Grande-Garcia
compound source
Molecule: Cad Protein
Chain: A
Fragment: Residues 1456-1846
Synonym: Dihydroorotase
Ec: 3.4.2.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
Expression_system_vector_type: Plasmid
Expression_system_vector: Popin-M
symmetry Space Group: C 2 2 21
R_factor 0.1225 R_Free 0.1478
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.110 158.800 60.760 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand FMT, KCX, ZN enzyme Hydrolase E.C.3.4.2.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure, Functional Characterization, and Evolution of the Dihydroorotase Domain of Human CAD., Grande-Garcia A, Lallous N, Diaz-Tejada C, Ramon-Maiques S, Structure. 2013 Dec 10. pii: S0969-2126(13)00428-0. doi:, 10.1016/j.str.2013.10.016. PMID:24332717
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (4c6c.pdb1.gz) 385 Kb
  • LPC: Ligand-Protein Contacts for 4C6C
  • CSU: Contacts of Structural Units for 4C6C
  • Structure Factors (1054 Kb)
  • Retrieve 4C6C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4C6C from S2C, [Save to disk]
  • Re-refined 4c6c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4C6C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4C6C
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4C6C, from MSDmotif at EBI
  • Fold representative 4c6c from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4c6c] [4c6c_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4C6C
  • Community annotation for 4C6C at PDBWiki (http://pdbwiki.org)

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