4C9W Crystal structure of NUDT1 (MTH1) with R-crizotinib date
authors Elkins, J.M., Salah, E., Huber, K., Superti-Furga, G., Azeez, K.R.Abdul., Raynor, J., Krojer, T., Delft, F.von., Bountra, C., Edwards, A., Knapp, S.
compound source
symmetry
R_factor
R_Free 0.21812
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.65
ligand CL, SO4, VGH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStereospecific targeting of MTH1 by (S)-crizotinib as an anticancer strategy., Huber KV, Salah E, Radic B, Gridling M, Elkins JM, Stukalov A, Jemth AS, Gokturk C, Sanjiv K, Stromberg K, Pham T, Berglund UW, Colinge J, Bennett KL, Loizou JI, Helleday T, Knapp S, Superti-Furga G, Nature. 2014 Apr 10;508(7495):222-7. doi: 10.1038/nature13194. Epub 2014 Apr 2. PMID:24695225
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (4c9w.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 4C9W
  • CSU: Contacts of Structural Units for 4C9W
  • Structure Factors (938 Kb)
  • Retrieve 4C9W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4C9W from S2C, [Save to disk]
  • Re-refined 4c9w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4C9W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4C9W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4C9W, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4c9w_A] [4c9w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4C9W
  • Community annotation for 4C9W at PDBWiki (http://pdbwiki.org)

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