OCA Atlas for 4CAD

4CAD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BOG, LMT

enzyme

Gene
Ontology

Chain	Function	Process	Component
F, C, I, L

Primary reference

Mechanism of farnesylated CAAX protein processing by the intramembrane protease Rce1., Manolaridis I, Kulkarni K, Dodd RB, Ogasawara S, Zhang Z, Bineva G, O'Reilly N, Hanrahan SJ, Thompson AJ, Cronin N, Iwata S, Barford D, Nature. 2013 Dec 1. doi: 10.1038/nature12754. PMID:24291792

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (917 Kb) [Save to disk]

Biological Unit Coordinates (4cad.pdb1.gz) 230 Kb

Biological Unit Coordinates (4cad.pdb2.gz) 231 Kb

Biological Unit Coordinates (4cad.pdb3.gz) 230 Kb

Biological Unit Coordinates (4cad.pdb4.gz) 233 Kb

LPC: Ligand-Protein Contacts for 4CAD

CSU: Contacts of Structural Units for 4CAD

Structure Factors (2271 Kb)

Retrieve 4CAD in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4CAD from S2C, [Save to disk]

Re-refined 4cad structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4CAD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4cad] [4cad_A] [4cad_B] [4cad_C] [4cad_D] [4cad_E] [4cad_F] [4cad_G] [4cad_H] [4cad_I] [4cad_J] [4cad_K] [4cad_L]

SWISS-PROT database:

Domains found in 4CAD: [IG_like] [IGv ] by SMART

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