4CAY Transcription date Oct 09, 2013
title Crystal Structure Of A Human Anp32e-H2a.Z-H2b Complex
authors A.Obri, K.Ouararhni, C.Papin, M.L.Diebold, K.Padmanabhan, M.Mare I.Stoll, L.Roy, P.T.Reilly, T.W.Mak, S.Dimitrov, C.Romier, A.Hami
compound source
Molecule: Histone H2a.Z
Chain: A
Fragment: Globular Domain, Residues 19-128
Synonym: H2az
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pncs

Molecule: Histone H2b Type 1-J
Chain: B
Fragment: Globular Domain, Residues 31-126
Synonym: Histone H2b.1, Histone H2b.R, H2br, H2b
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pncs

Molecule: Acidic Leucine-Rich Nuclear Phosphoprotein 32 Fam Member E;
Chain: C
Fragment: H2a.Z Interacting Domain (Zid), Residues 215-240
Synonym: Lanp-Like Protein, Lanp-L, Anp32e
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnea-Th
symmetry Space Group: P 1 21 1
R_factor 0.1680 R_Free 0.1952
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.816 66.076 45.293 90.00 95.76 90.00
method X-Ray Diffractionresolution 1.48 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceANP32E is a histone chaperone that removes H2A.Z from chromatin., Obri A, Ouararhni K, Papin C, Diebold ML, Padmanabhan K, Marek M, Stoll I, Roy L, Reilly PT, Mak TW, Dimitrov S, Romier C, Hamiche A, Nature. 2014 Jan 30;505(7485):648-53. doi: 10.1038/nature12922. Epub 2014 Jan 22. PMID:24463511
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (4cay.pdb1.gz) 71 Kb
  • CSU: Contacts of Structural Units for 4CAY
  • Structure Factors (356 Kb)
  • Retrieve 4CAY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CAY from S2C, [Save to disk]
  • Re-refined 4cay structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CAY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CAY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4CAY, from MSDmotif at EBI
  • Fold representative 4cay from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cay_A] [4cay] [4cay_C] [4cay_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4CAY: [H2A] [H2B ] by SMART
  • Other resources with information on 4CAY
  • Community annotation for 4CAY at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science