4CBO Hydrolase date Oct 15, 2013
title Crystal Structure Of Complement Factor D Mutant R202a After Refinement
authors F.Forneris, B.T.Burnley, P.Gros
compound source
Molecule: Complement Factor D
Chain: A, B
Fragment: Residues 26-253
Synonym: Adipsin, C3 Convertase Activator, Properdin Factor
Ec: 3.4.21.46
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
symmetry Space Group: P 21 21 21
R_factor 0.1634 R_Free 0.2116
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.140 67.310 133.140 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand GOL enzyme Hydrolase E.C.3.4.21.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceEnsemble refinement shows conformational flexibility in crystal structures of human complement factor D., Forneris F, Burnley BT, Gros P, Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):733-43. doi:, 10.1107/S1399004713032549. Epub 2014 Feb 15. PMID:24598742
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22257 Kb) [Save to disk]
  • Biological Unit Coordinates (4cbo.pdb1.gz) 150 Kb
  • Biological Unit Coordinates (4cbo.pdb2.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 4CBO
  • CSU: Contacts of Structural Units for 4CBO
  • Structure Factors (1853 Kb)
  • Retrieve 4CBO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CBO from S2C, [Save to disk]
  • View 4CBO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CBO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4CBO, from MSDmotif at EBI
  • Fold representative 4cbo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cbo] [4cbo_B] [4cbo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4CBO: [Tryp_SPc ] by SMART
  • Other resources with information on 4CBO
  • Community annotation for 4CBO at PDBWiki (http://pdbwiki.org)

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