4CCG Ligase date Oct 22, 2013
title Structure Of An E2-E3 Complex
authors C.Hodson, A.Purkiss, H.Walden
compound source
Molecule: Ubiquitin-Conjugating Enzyme E2 T
Chain: A, B
Synonym: Cell Proliferation-Inducing Gene 50 Protein, Ubiqu Carrier Protein T, Ubiquitin-Protein Ligase T, Fancl Ring Ligase And Ube2t;
Engineered: Yes
Other_details: Ring Domain Of Fancl Fused By Linker To N-Te Of Ube2t To Generate A Fusion Polypeptide.;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Champion Pet Sumo

Molecule: E3 Ubiquitin-Protein Ligase Fancl
Chain: X, Y
Fragment: Ring Domain Of Fancl, Residues 288-375
Synonym: Fanconi Anemia Group L Protein, Fanconi Anemia-Ass Polypeptide Of 43 Kda, Faap43, Fancl Ring E3 Ligase And Ub
Ec: 6.3.2.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Champion Pet Sumo
symmetry Space Group: P 43 21 2
R_factor 0.2124 R_Free 0.2476
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.224 109.224 117.728 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CL, EPE, GOL, NA, NH4, SO4, ZN enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the Human FANCL RING-Ube2T Complex Reveals Determinants of Cognate E3-E2 Selection., Hodson C, Purkiss A, Miles JA, Walden H, Structure. 2013 Dec 31. pii: S0969-2126(13)00466-8. doi:, 10.1016/j.str.2013.12.004. PMID:24389026
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]
  • Biological Unit Coordinates (4ccg.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (4ccg.pdb2.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 4CCG
  • CSU: Contacts of Structural Units for 4CCG
  • Structure Factors (500 Kb)
  • Retrieve 4CCG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CCG from S2C, [Save to disk]
  • Re-refined 4ccg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CCG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CCG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4CCG, from MSDmotif at EBI
  • Fold representative 4ccg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ccg] [4ccg_X] [4ccg_A] [4ccg_Y] [4ccg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4CCG: [FANCL_C] [RING] [UBCc ] by SMART
  • Other resources with information on 4CCG
  • Community annotation for 4CCG at PDBWiki (http://pdbwiki.org)

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