4CCK 60S ribosomal protein L8 histidine hydroxylase (NO66) in complex with Mn(II) and N-oxalylglycine (NOG) date
authors Chowdhury, R., Ge, W., Clifton, I.J., Schofield, C.J.
compound source
symmetry
R_factor
R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
ligand EDO, MN, OGA enzyme
Primary referenceRibosomal oxygenases are structurally conserved from prokaryotes to humans., Chowdhury R, Sekirnik R, Brissett NC, Krojer T, Ho CH, Ng SS, Clifton IJ, Ge W, Kershaw NJ, Fox GC, Muniz JR, Vollmar M, Phillips C, Pilka ES, Kavanagh KL, von Delft F, Oppermann U, McDonough MA, Doherty AJ, Schofield CJ, Nature. 2014 May 11. doi: 10.1038/nature13263. PMID:24814345
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (314 Kb) [Save to disk]
  • Biological Unit Coordinates (4cck.pdb1.gz) 307 Kb
  • LPC: Ligand-Protein Contacts for 4CCK
  • CSU: Contacts of Structural Units for 4CCK
  • Structure Factors (7079 Kb)
  • Retrieve 4CCK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CCK from S2C, [Save to disk]
  • Re-refined 4cck structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4CCK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4CCK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CCK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cck] [4cck_B] [4cck_C] [4cck_D] [4cck_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4CCK: [JmjC ] by SMART
    • Other resources with information on 4CCK
  • Community annotation for 4CCK at PDBWiki (http://pdbwiki.org)

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