4CDD Human DPP1 in complex with (2S)-N-((1S)-1-cyano-2-(4-(4-cyanophenyl) phenyl)ethyl)piperidine-2-carboxamide date
authors Debreczeni, J., Edman, K., Furber, M., Tiden, A., Gardiner, P., Mete, T., Ford, R., Millichip, I., Stein, L., Mather, A., Kinchin, E., Luckhurst, C., Cage, P., Sanghanee, H., Breed, J., Wissler, L.
compound source
symmetry
R_factor
R_Free 0.22302
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
ligand CL, GDI, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, C, E, B


Primary referenceCathepsin C Inhibitors: Property Optimization and Identification of a Clinical Candidate., Furber M, Tiden AK, Gardiner P, Mete A, Ford R, Millichip I, Stein L, Mather A, Kinchin E, Luckhurst C, Barber S, Cage P, Sanganee H, Austin R, Chohan K, Beri R, Thong B, Wallace A, Oreffo V, Hutchinson R, Harper S, Debreczeni J, Breed J, Wissler L, Edman K, J Med Chem. 2014 Mar 14. PMID:24592859
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk]
  • Biological Unit Coordinates (4cdd.pdb1.gz) 117 Kb
  • Biological Unit Coordinates (4cdd.pdb2.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 4CDD
  • CSU: Contacts of Structural Units for 4CDD
  • Structure Factors (695 Kb)
  • Retrieve 4CDD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CDD from S2C, [Save to disk]
  • Re-refined 4cdd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CDD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CDD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CDD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cdd_E] [4cdd_B] [4cdd_C] [4cdd] [4cdd_A] [4cdd_F] [4cdd_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4CDD: [Pept_C1 ] by SMART
  • Other resources with information on 4CDD
  • Community annotation for 4CDD at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science