4CDF Human DPP1 in complex with (2S,4S)-N-((1S)-1-cyano-2-(4-(4- cyanophenyl)phenyl)ethyl)-4-hydroxy-piperidine-2-carboxamide date
authors Debreczeni, J., Edman, K., Furber, M., Tiden, A., Gardiner, P., Mete, T., Ford, R., Millichip, I., Stein, L., Mather, A., Kinchin, E., Luckhurst, C., Cage, P., Sanghanee, H., Breed, J., Wissler, L.
compound source
symmetry
R_factor
R_Free 0.25475
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand CL, NAG, W2C enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, C, E, B


Primary referenceCathepsin C Inhibitors: Property Optimization and Identification of a Clinical Candidate., Furber M, Tiden AK, Gardiner P, Mete A, Ford R, Millichip I, Stein L, Mather A, Kinchin E, Luckhurst C, Barber S, Cage P, Sanganee H, Austin R, Chohan K, Beri R, Thong B, Wallace A, Oreffo V, Hutchinson R, Harper S, Debreczeni J, Breed J, Wissler L, Edman K, J Med Chem. 2014 Mar 14. PMID:24592859
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk]
  • Biological Unit Coordinates (4cdf.pdb1.gz) 118 Kb
  • Biological Unit Coordinates (4cdf.pdb2.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 4CDF
  • CSU: Contacts of Structural Units for 4CDF
  • Structure Factors (884 Kb)
  • Retrieve 4CDF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CDF from S2C, [Save to disk]
  • Re-refined 4cdf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CDF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CDF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CDF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cdf_F] [4cdf_A] [4cdf_E] [4cdf_B] [4cdf_C] [4cdf_D] [4cdf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4CDF: [Pept_C1 ] by SMART
  • Other resources with information on 4CDF
  • Community annotation for 4CDF at PDBWiki (http://pdbwiki.org)

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