4CEK Crystal structure of the second MIF4G domain of human nonsense mediated decay factor UPF2 date
authors Clerici, M., Deniaud, A., Boehm, V., Gehring, N.H., Schaffitzel, C., Cusack, S.
compound source
symmetry
R_factor
R_Free 0.25083
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and functional analysis of the three MIF4G domains of nonsense-mediated decay factor UPF2., Clerici M, Deniaud A, Boehm V, Gehring NH, Schaffitzel C, Cusack S, Nucleic Acids Res. 2013 Nov 23. PMID:24271394
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (4cek.pdb1.gz) 41 Kb
  • CSU: Contacts of Structural Units for 4CEK
  • Structure Factors (153 Kb)
  • Retrieve 4CEK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CEK from S2C, [Save to disk]
  • Re-refined 4cek structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4CEK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4CEK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CEK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cek_A] [4cek]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4CEK: [MIF4G ] by SMART
    • Other resources with information on 4CEK
  • Community annotation for 4CEK at PDBWiki (http://pdbwiki.org)

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