4CFH Structure of an active form of mammalian AMPK date
authors Xiao, B., Sanders, M.J., Underwood, E., Heath, R., Mayer, F., Carmena, D., Jing, C., Walker, P.A., Eccleston, J.F., Haire, L.F., Saiu, P., Howell, S.A., Aasland, R., Martin, S.R., Carling, D., Gamblin, S.J.
compound source
symmetry
R_factor
R_Free 0.2677
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.24
ligand AMP, STU, TPO enzyme
note 4CFH supersedes 2Y94
Gene
Ontology
ChainFunctionProcessComponent
A


B


E


Primary referenceStructure of mammalian AMPK and its regulation by ADP., Xiao B, Sanders MJ, Underwood E, Heath R, Mayer FV, Carmena D, Jing C, Walker PA, Eccleston JF, Haire LF, Saiu P, Howell SA, Aasland R, Martin SR, Carling D, Gamblin SJ, Nature. 2011 Apr 14;472(7342):230-3. Epub 2011 Mar 13. PMID:21399626
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk]
  • Biological Unit Coordinates (4cfh.pdb1.gz) 273 Kb
  • LPC: Ligand-Protein Contacts for 4CFH
  • CSU: Contacts of Structural Units for 4CFH
  • Structure Factors (344 Kb)
  • Retrieve 4CFH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CFH from S2C, [Save to disk]
  • Re-refined 4cfh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4CFH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4CFH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CFH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cfh_A] [4cfh_C] [4cfh] [4cfh_B] [4cfh_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4CFH: [AMPKBI] [CBS] [S_TKc ] by SMART
    • Other resources with information on 4CFH
  • Community annotation for 4CFH at PDBWiki (http://pdbwiki.org)

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