4CHG	Crystal structure of VapBC15 complex from Mycobacterium tuberculosis	date
authors	Das, U., Pogenberg, V., Subhramanyam, U.K.Tiruttani., Wilmanns, M., Srinivasan, A., Gourinath, S.
compound		source
symmetry		R_factor R_Free 0.1997
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.10
ligand	MG, MN, MSE	enzyme
Gene Ontology	Chain Function Process Component F, A, E, B, C, D nuclease activity ribonuclease activity J, H, I, G
Primary reference	Crystal structure of the VapBC-15 complex from Mycobacterium tuberculosis reveals a two-metal ion dependent PIN-domain ribonuclease and a variable mode of toxin-antitoxin assembly., Das U, Pogenberg V, Subhramanyam UK, Wilmanns M, Gourinath S, Srinivasan A, J Struct Biol. 2014 Oct 22;188(3):249-258. doi: 10.1016/j.jsb.2014.10.002. PMID:25450593

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (329 Kb) [Save to disk] Biological Unit Coordinates (4chg.pdb1.gz) 111 Kb Biological Unit Coordinates (4chg.pdb2.gz) 104 Kb Biological Unit Coordinates (4chg.pdb3.gz) 103 Kb LPC: Ligand-Protein Contacts for 4CHG CSU: Contacts of Structural Units for 4CHG Structure Factors (5462 Kb) Retrieve 4CHG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4CHG from S2C, [Save to disk] Re-refined 4chg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4CHG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4CHG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4CHG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4chg_E] [4chg_F] [4chg_A] [4chg_D] [4chg_C] [4chg_H] [4chg_B] [4chg] [4chg_G] [4chg_J] [4chg_I] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4CHG: [PINc ] by SMART

Other resources with information on 4CHG

Community annotation for 4CHG at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---