4CLI Structure of the Human Anaplastic Lymphoma Kinase in Complex with PF- 06463922 ((10R)-7-amino-12-fluoro-2,10,16-trimethyl-15-oxo-10,15,16, 17-tetrahydro-2H-8,4-(metheno)pyrazolo(4,3-h)(2,5,11) benzoxadiazacyclotetradecine-3-carbonitrile). date
authors McTigue, M.A., Deng, Y.L., Liu, W., Brooun, A., Stewart, A.E.
compound source
symmetry
R_factor
R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.05
ligand 5P8 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of (10R)-7-amino-12-fluoro-2,10,16-trimethyl-15-oxo-10,15,16,17-tetrahydro-2H-8,4-(m etheno)pyrazolo[4,3-h][2,5,11]benzoxadiazacyclotetradecine-3-carbonitrile (PF-06463922), a macrocyclic inhibitor of ALK/ROS1 with pre-clinical brain exposure and broad spectrum potency against ALK-resistant mutations., Johnson TW, Richardson PF, Bailey S, Brooun A, Burke BJ, Collins MR, Cui JJ, Deal JG, Deng YL, Dinh DM, Engstrom LD, He M, Hoffman JE, Hoffman RL, Huang Q, Kath J, Kania RS, Lam H, Lam JL, Le PT, Lingardo L, Liu W, McTigue MA, Palmer CL, Sach NW, Smeal T, Smith GL, Stewart AE, Timofeevski SL, Zhu H, Zhu J, Zou HY, Edwards MP, J Med Chem. 2014 May 13. PMID:24819116
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (4cli.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 4CLI
  • CSU: Contacts of Structural Units for 4CLI
  • Structure Factors (407 Kb)
  • Retrieve 4CLI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CLI from S2C, [Save to disk]
  • Re-refined 4cli structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CLI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CLI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4CLI, from MSDmotif at EBI
  • Fold representative 4cli from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cli_A] [4cli]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4CLI: [TyrKc ] by SMART
  • Other resources with information on 4CLI
  • Community annotation for 4CLI at PDBWiki (http://pdbwiki.org)

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