4CML Crystal Structure of INPP5B in complex with Phosphatidylinositol 3,4- bisphosphate date
authors Tresaugues, L., Arrowsmith, C.H., Berglund, H., Bountra, C., Edwards, A.M., Ekblad, T., Flodin, S., Graslund, S., Karlberg, T., Moche, M., Nyman, T., Schuler, H., Silvander, C., Thorsell, A.G., Weigelt, J., Welin, M., Nordlund, P.
compound source
symmetry
R_factor
R_Free 0.19930
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand 52N, CL, GOL, MG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis for Phosphoinositide Substrate Recognition, Catalysis, and Membrane Interactions in Human Inositol Polyphosphate 5-Phosphatases., Tresaugues L, Silvander C, Flodin S, Welin M, Nyman T, Graslund S, Hammarstrom M, Berglund H, Nordlund P, Structure. 2014 Apr 2. pii: S0969-2126(14)00073-2. doi:, 10.1016/j.str.2014.01.013. PMID:24704254
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk]
  • Biological Unit Coordinates (4cml.pdb1.gz) 347 Kb
  • LPC: Ligand-Protein Contacts for 4CML
  • CSU: Contacts of Structural Units for 4CML
  • Structure Factors (1963 Kb)
  • Retrieve 4CML in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CML from S2C, [Save to disk]
  • Re-refined 4cml structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CML in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CML
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CML, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cml] [4cml_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4CML: [IPPc ] by SMART
  • Other resources with information on 4CML
  • Community annotation for 4CML at PDBWiki (http://pdbwiki.org)

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