4CN2 Crystal Structure of the Human Retinoid X Receptor DNA-Binding Domain Bound to the Human Ramp2 Response Element date
authors McEwen, A.G., Poussin-Courmontagne, P., Osz, J., Rochel, N.
compound source
symmetry
R_factor
R_Free 0.2142
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.07
ligand CL, MES, MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, C


Primary referenceStructural basis of natural promoter recognition by the retinoid x nuclear receptor., Osz J, McEwen AG, Poussin-Courmontagne P, Moutier E, Birck C, Davidson I, Moras D, Rochel N, Sci Rep. 2015 Feb 3;5:8216. doi: 10.1038/srep08216. PMID:25645674
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (4cn2.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 4CN2
  • CSU: Contacts of Structural Units for 4CN2
  • Structure Factors (902 Kb)
  • Retrieve 4CN2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CN2 from S2C, [Save to disk]
  • Re-refined 4cn2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4CN2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4CN2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CN2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cn2_C] [4cn2_D] [4cn2_B] [4cn2_A] [4cn2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4CN2: [ZnF_C4 ] by SMART
    • Other resources with information on 4CN2
  • Community annotation for 4CN2 at PDBWiki (http://pdbwiki.org)

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