4CO8 Structure of the DNA binding ETS domain of human ETV4 date
authors Newman, J.A., Cooper, C.D.O., Shrestha, L., Burgess-Brown, N., Kopec, J., Delft, F.von., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Gileadi, O.
compound source
symmetry
R_factor
R_Free 0.13201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.05
ligand EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of the Ets Domains of Transcription Factors ETV1, ETV4, ETV5 and FEV: Determinants of DNA Binding and Redox Regulation by Disulfide bond formation., Cooper CD, Newman JA, Aitkenhead H, Allerston CK, Gileadi O, J Biol Chem. 2015 Apr 12. pii: jbc.M115.646737. PMID:25866208
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (4co8.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 4CO8
  • CSU: Contacts of Structural Units for 4CO8
  • Structure Factors (2427 Kb)
  • Retrieve 4CO8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CO8 from S2C, [Save to disk]
  • Re-refined 4co8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CO8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CO8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CO8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4co8] [4co8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4CO8: [ETS ] by SMART
  • Other resources with information on 4CO8
  • Community annotation for 4CO8 at PDBWiki (http://pdbwiki.org)

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