4COO Lyase date Jan 29, 2014
title Crystal Structure Of Human Cystathionine Beta-Synthase (Delta516-525) At 2.0 Angstrom Resolution
authors T.J.Mccorvie, J.Kopec, M.Vollamar, C.Strain-Damerell, S.Bushell, A.Bradley, C.Tallant, W.Kiyani, D.S.Froese, E.S.Carpenter, N.Burgess-Brown, F.Von Delft, C.Arrowsmith, A.Edwards, C.Bountr W.W.Yue
compound source
Molecule: Cystathionine Beta-Synthase
Chain: A, B
Fragment: Catalytic And Regulatory Domains, Residues 1-515,
Synonym: Beta-Thionase, Serine Sulfhydrase
Ec: 4.2.1.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_vector: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.17381 R_Free 0.20068
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.264 116.193 167.990 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ACT, EDO, HEM, NA, PE4, PLP enzyme Lyase E.C.4.2.1.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nitrite reductase (NO-formin...


  • Primary referenceInter-Domain Communication Of Human Cystathionine Beta Synthase: Structural Basis Of S-Adenosyl-L-Methionine Activation., McCorvie TJ, Kopec J, Hyung SJ, Fitzpatrick F, Feng X, Termine D, Strain-Damerell C, Vollmar M, Fleming J, Janz JM, Bulawa C, Yue WW, J Biol Chem. 2014 Oct 21. pii: jbc.M114.610782. PMID:25336647
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (335 Kb) [Save to disk]
  • Biological Unit Coordinates (4coo.pdb1.gz) 326 Kb
  • LPC: Ligand-Protein Contacts for 4COO
  • CSU: Contacts of Structural Units for 4COO
  • Structure Factors (4967 Kb)
  • Retrieve 4COO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4COO from S2C, [Save to disk]
  • Re-refined 4coo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4COO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4COO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4COO, from MSDmotif at EBI
  • Fold representative 4coo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4coo] [4coo_A] [4coo_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4COO: [CBS ] by SMART
  • Other resources with information on 4COO
  • Community annotation for 4COO at PDBWiki (http://pdbwiki.org)

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